Background
Background: Raghava is a Professor & Head at Department of Computational Biology, Indraprastha Institute of Information Technology (IIIT-Delhi), India. Before joining IIIT-Delhi in 2017, he was working as Chief Scientist at Bioinformatics Centre, CSIR-Institute of Microbial Technology (IMTECH), Chandigarh, India. He did M.Tech from Indian Institute of Technology (I.I.T.), New Delhi in 1986 and Ph.D. in Bioinformatics (1996) from IMTECH, Chandigarh. He worked as Postdoctoral fellow at Oxford university, Oxford and European Bioinformatics Institute, Cambridge UK (1996-98). Worked as Bioinformatics specialist at UAMS, USA (2002-3 & 2006) where he establish bioinformatics infastructure. Raghava woked as visiting professor at POSTECH, South Korea in year 2004.
Scientific Contribution:
Raghava is a strong suporter of open source software and open access, all resouces develoed at his group are free for scientific use. His group developed more than 250 web servers and 40 databases in the field of computer-aided drug/vaccine design (probably highest number of services developed/maintained from a single group in the world). These services are heavily used by scientific community, nearly 150,000 hits per day. Group published more than 300 research papers in reputed journals with avargae impact factor around 4.0 Most of papers are highly cited, total citations more than 27500 with h-index 84 and g-index 255 as per google scholar. In addition group contributed/maintained number of web sites that include i) CRDD, ii) OSCADD, iii) OSDDlinux, iv) GPSR Packages, v) GPSRdocker
Major Awards/Honours:
- Sun Pharma Research Award 2018 by Sun Pharma Science Foundation
- Scientist Award 2019 by Organisation of Pharmaceutical Producers of India
- Listed in The Worlds' Most Influential Scientific Minds 2014
- Shanti Swarup Bhatnagar Award in Biological Science, 2008
- National Bioscience Award for Carrier Development, for year 2005-2006
- NASI-Reliance Industries Platinum Jubilee Award, 2009;
- Thomson Reuters Research Excellence - India Research Front Awards, 2009
- Prestigious J. C. Bose National Fellowship by DST, 2010.
- Lakshmipat Singhania-IIM Lucknow National Leadership Awards 2011 (Young Leader)
- Fellow of National Academy of Sciences (F.N.A.Sc)
- Fellow of Indian Academy of Science (F.A.Sc.) Banglore.
- Fellow of Indian National Science Academy (F.N.A) Delhi
Web Services (A-Z)
Name | Description |
---|---|
ABCpred | Mapping of B-cell epitope(s) in an antigen sequence, using artificial neural network. |
ABMpred | Prediction of AntiBacterial Compounds against MurA Enzyme. |
ABSource | All possible informations regarding the antibodies. |
ADPint | Predicion of ADP interacting residue. |
AHTPDB | Database of antihypertensive peptides. |
AHTpin | Designing and virtual screening of antihypertensive peptides. |
ALGpred | Prediction of allergenic proteins and mapping of IgE epitopes in antigens. |
ALGpred2 | Updated method for Predicting of allergenic proteins |
ALPHApred | A neural network based method for predicting alpha-turn in a protein. |
AntiAngioPred | A Server for Prediction of Anti-Angiogenic Peptides. |
AntiBP | Mapping of antibacterial peptides in a protein sequence. |
AntiBP2 | Mapping of antibacterial peptides in a protein sequence. |
AntiCP | Prediction and design of anticancer peptides. |
AntiCP2 | Improve Method for Prediction and design of anticancer peptides. |
AntiFP | Prediction and design of antifungal peptides. |
AntigenDB | An immunoinformatics database of pathogen antigens. |
AntiMPmod | Prediction of modified antimicrobial peptides. |
AntiTbPdb | A database of anti-tubercular peptides. |
AntiTbPred | Prediction of anti-tubercular peptides. |
ApoCanD | Database of Human Apoptotic Proteins in the context of cancer. |
APSSP | Advanced Protein Secondary Structure Prediction Server. |
APPSP2 | Prediction of secondary structure of proteins from their amino acid sequence. |
AR_NHpred | Identification of aromatic-backbone NH interaction in protein residues. |
ATPint | Identification of ATP binding sites in ATP-binding proteins. |
B3PDB | A Database of Blood Brain Barrier Pentrating Peptides. |
B3pred | Prediction of Blood Brain Barrier Pentrating Peptides. |
BCEpred | Prediction of linear B-cell epitopes, using Physico-chemical properties. |
Bcipep | Collection & compilation of B-cell epitopes from literature. |
BetaTPred | Statistical-based method for predicting Beta Turns in a protein. |
BetaTPred2 | Updated statistical-based method for predicting Beta Turns in a protein. |
BetaTPred3 | Propensity based prediction of beta turns and their types. |
BetaTurns | Prediction of beta turn types. |
BhairPred | Prediction of beta hairpins in proteins using ANN and SVM techniques. |
BIAdb | A Database for Benzylisoquinoline Alkaloids. |
BioTherapi | Bioinformatics for Therapeutic Peptides and Proteins. |
BTEval | Evaluation of beta-turns prediction methods. |
BTXpred | A server for predicting bacterial toxins. |
CancerCSP | Gene expression-based biomarkers for discriminating early and late stage of clear cell renal cancer. |
CancerDP | Prioritization of anticancer drugs against a cancer using genomic features of cancer cells. |
CancerDR | Cancer drug resistance database. |
CancerEND | A Comprehensive Resource On Enhancer Information For TCGA Cancer Types |
CanceRES | Cancer Informatics Portal. |
CancerIN | A web server for predicting anticancer activity of molecules. |
CancerLiver | A Database of Gene expression and Biomarker data of Liver Cancer |
CancerLSP | Liver Heptacellular Carcinoma Stage Prediction |
CancerPDF | Database of cancer-associated peptides of human bodyfluids. |
CancerPPD | Database of anticancer peptides and proteins. |
CancerPred | Prediction of the cancerlectins. |
CancerSPP | Prediction of Skin Cancer Progression from Genomic Profile of Patients |
CancerTope | A Platform for Designing Genome-Based Personalized Immunotherapy or Vaccine against Cancer. |
CancerUBM | Web bench for analysis of proteomics data and prediction of cancer status of a urine samples. |
CBTOPE | Conformational B-cell Epitope prediction. |
CCDB | Database of genes involved in Cervix Cancer. |
ccPDB 2.0 | Compilation and Creation of datasets from PDB. |
CellPPD-Mod | Prediction of Cell Penetrating Potential of Chemically Modified Peptides |
CellPPD | Computer-aided Designing of efficient cell penetrating peptides. |
ChemoPred | A server to predict chemokines and their receptor |
ChloroPred | Prediction of chloroplast proteins. |
CHpredict | Prediction of CH-O, CH-PI interactions in backbone residues of a protein |
Codon | Plot Graph for Codon Composition (from standard codon usage table) Vs Codons. |
COPid | Composition based identification and classification of proteins. |
CPPsite | A web page for cell penetrating peptides. |
CPPsite 2.0 | A database of experimentally validated natural and modified cell penetrating Peptides. |
CRDD | Computational resources for drug discovery. |
CRCRpred | Risk prediction of Colorectal Cancer Patients |
CRIP | Computational Resources for molecular Interaction Prediction. |
CTLpred | A direct method for prediction of CTL epitopes. |
CytoPred | It is a webserver for prediction and classification of cytokines. |
CyclinPred | CyclinPred is a SVM based prediction method to identify novel cyclins. |
DADPred | Prediction of drugs against aspartate semialdehyde dehydrogenase of DAP pathway. |
DAMpro | Disease Associated Mutations in Proteins. |
dbEM | Database of inhibitors of Dengue virus |
DenvInD | A Database of Epigenetic Modifiers |
desiRam | Designing of highly efficient siRNA with minimum mutation approach. |
DiPCell | Designing of inhibitors against pancreatic cancer cell lines. |
DMKPred | A webserver for the prediction of binding of chemical molecules with specific kinases. |
DNAbinder | A webserver for predicting DNA-binding proteins. |
DNAint | Prediction of DNA Interacting Residues. |
DNAsize | Computation of size of DNA and Protein Fragments from Their Electrophoretic Mobility. |
DOMprint | SVM based model for predicting domain-domain interaction (DDI). |
DPROT | SVM-based method for predicting of disordered proteins. |
DrugMint | A web server for identification of drug like molecules. |
EbolaVCR | A web-based resource for designing therapeutics against Ebola Virus. |
ECDB | Endometrial cancer gene database. |
ECGPred | Analsis of expresion data and correlation between gene expression and nucleotides composition of genes. |
EGFRindb | A database of EGF(Epidermal Growth Factor) receptors (anticaner database). |
EGFRPred | A web service for the predicting and designing of inhibitors against EGFR (anticancer drugs). |
EGPred | Prediction of gene (protein coding regions) in eukaryote genomes that includes introns/exons. |
ESLPred | Subcellular localization of the eukaryotic proteins using dipeptide compostion and PSI-BLAST. |
ESLPred2 | Advanced method for subcellular localization of eukaryotic proteins. |
FADPred | A webserver for the prediction of FAD interacting residues. |
FermFooDb | A database of bioactive peptides derived from fermented foods |
FTG | Locating probable protein coding region in nucleotide sequence using FFT based algorithm. |
FTGPred | Gene Identification using Fourier Transformation. |
GammaPred | Identification of gamma-turn containing residues in a given protein sequence. |
GDoQ | iPrediction of GLMU inhibitors (anti-tubeculosis inhibitors) using QSAR and docking apprach. |
GeneBench | A suite of tools and datasets for benchmarking gene finders. |
Genomeabc | GenomeABC is a web server for evaluating the performance of genome assemblers. |
GlycoEP | Prediction of C-, N- and O-glycosylation site in eukaryotic proteins. |
GlycoPP | Prediction of potential N-and O-glycosites in prokaryotic proteins. |
GMPEsi | Generalized Model for Predicting Efficacy of siRNAs. |
GPCRpred | Prediction of families and superfamilies of G-protein coupled receptors (GPCR). |
GPCRsclass | This webserver predicts amine type of G-protein coupled receptors. |
GPSR | A resource for genomocs, proteomics and system biology. |
GSTPred | SVM-based method for predicting Glutathione S-transferase protein. |
GTPbinder | Identification of GTP binding residue in protein sequences. |
GDPbio | Genome based prediction of Diseases and Personal Medicine |
HaptenDB | A database of haptens, provide comprehensive information about the hapten molecule. |
Hemolytik | A repository of experimentally validated hemolytic and non-hemolytic peptides. |
HemoPI | Prediction and virtual screening of hemolytic peptides. |
HerceptinR | Information about assays performend to test sensitivity/resistance of Herceptin Antibodies. |
HIVbio | HIV related bioinformatics resources. |
HIVcoPred | Predicting coreceptor used by HIV-1 from Its V3 loop amino acid sequence. |
HIVFin | Prediction of Fusion Inhibitors against HIV (drugs against HIV). |
HIVint | Prediction of protein-protein interaction between HIV and Human proteins. |
HIVsirDB | A manually curated database of anti-HIV siRNAs. |
HLA-DR4Pred | Identification of HLA-DRB1*0401(MHC class II alleles) binding peptides. |
HLAPred | Identification and prediction of HLA class I and class II Binders. |
HLP | A webserver for predicting half-life of peptides in intestine like environment. |
HMRbase | A manually curated database of hormones and their Receptors. |
HSLPred | Prediction of subcellular localization of human proteins with high accuracy. |
HumCFS | A database of fragile sites in human chromosome. |
icaars | Identification & Classification of Aminoacyl tRNA Synthetases. |
IFNepitope | A server for predicting and designing interferon-gamma inducing epitopes. |
IgPred | Prediction of antibody specific B-cell epitope. |
IL10Pred | Prediction of Interleukin-10 inducing peptides. |
IL2Pred | In silico platform for designing and disovering of Interleukin-2 inducing peptides. |
IL4Pred | In silico platform for designing and disovering of Interleukin-4 inducing peptides. |
IL6pred | In silico platform for designing and disovering of Interleukin-4 inducing peptides. |
ImmunoSPdb | An archieve of Immunosppressive Peptide |
imRNA | Prediction of Immunomodulatory RNAs. |
ISSPred | Prediction of Intein Splice Site. |
KetoDrug | A web server for binding affinity prediction of ketoxazole derivatives against Fatty Acid Amide Hydrolase (FAAH) |
KiDoQ | Prediction of inhibition against dihydrodipicolinate synthase of M. Tuberculosis. |
LBtope | A server for predicting linear B-cell epitopes. |
LGEpred | Correlation analysis and prediction of genes expression from amino acid sequence of proteins. |
LPIcom | Analysis and prediction of ligand protein interaction. |
MANGO | Prediction of Protein Function from Manually Annotated proteins based on GO (Gene Ontology). |
MARSpred | Prediction of mitochondrial aminoacyl tRNA synthetases. |
MDRIpred | Predicting inhibitor against drug tolrent M.Tuberculosis. |
MetaPred | Prediction of Cytochrome P450 Isoform responsible for metabolizing a drug molecule. |
MHCBN 4.0 | A database of MHC/TAP binding peptides and T-cell epitopes. |
MitPred | Prediction of mitochondrial proteins using SVM and hidden Markov model. |
MtbVeb | A webportal for designing vaccine against drug resistant and emerging strains of M. tuberculosis. |
MycoPrInt | A tool fort exploration of the interactome of Mycobacterium tuberculosis. |
MycoTB | A software for managing mycobacterium tuberculosis. |
NADbinder | Prediction of NAD interacting residues in proteins. |
NAGbinder | Prediction of NAG interacting residues in proteins. |
nHLAPred | A neural network based method for predicting MHC Class-I binders. |
NPACT | A curated database of plant derived natural compounds that exhibit anti-cancerous activity. |
NpPred | A webserver for the prediction of nuclear proteins. |
NRpred | A SVM based method for the classification of nuclear receptors. |
ntEGFR | QSAR-Based Models for designing inhibitors against Wild and Mutant EGFR (anti-cancer drug). |
NTXpred | Identification of neurotoxins their source and function from primary amino acid sequence. |
OSCADD | Open Source for Computer-Aided Drug Discovery portal is for chemoinformatics and pharmacoinformatics. |
OSDDChem | A interface for large scale synthesis of diverse chemical compounds to screen them against TB and Malaria. |
OSDDlinux | A customize operating system for drug discovery. |
OvirusTdb | A database of oncolytic viruses |
OxDBase | A database of Biodegradative oxygenase. |
OxyPred | Classification and prediction of oxygen binding proteins. |
PAAINT | A webservice for predicting residue-residue contacts in proteins. |
ParaPep | Compilation of experimentally validated anti-parasitic peptides and their structures. |
Pcleavage | Identification of protesosomal cleavage sites in a protein sequence. |
PCMDB | A database of methylated genes found in pancreatic cancer cell lines and tissues. |
PElife | Database of experimentally validated therapeutic peptides and their half lives. |
PE2D | Secondary structure prediction of peptides |
PEPstrMOD | Structural prediction of peptides containing natural, non-natural and modified residues. |
Pfeature | Computing a wide range of features of proteins and peptides |
PFMpred | Predicting mitochondrial proteins of malaria parasite Plasmodium falciparum. |
PHDcleav | Prediction of human Dicer cleavage sites using sequence and secondary structure of miRNA precursors. |
PLDBench | Benchmarking of docking software on peptide-ligand complexes. |
PlifePred | An insilico method to design and predict the half life of modified and natural peptides in blood. |
PolyApred | Prediction of polyadenylation signal (PAS) in human DNA sequence. |
PolysacDB | A comprehensive Database of microbial Polysaccharide antigens and their antibodies. |
PPDBench | Benchmarking of docking software on protein-peptide complexes. |
PPRint | A web-server for predicting RNA-binding residues of a protein. |
PreMieR | A webserver for the prediction of Mannose Interacting residue. |
ProClass | protein structure classification server. |
ProCarDB | A database of bacterial carotenoids. |
ProGlycProt | Database of experimentally characterized eubacterial and archaeal glycoproteins. |
ProPred | A webserver to predict MHC Class-II binding regions in an antigen sequence. |
ProPred-1 | Prediction of promiscuous MHC Class-I binders. |
ProPrInt | A web-server predicts physical or functional interactions between protein molecules. |
PRRDB | A database of pattern recognition receptor. |
PRRDB2 | Updated database of pattern recognition receptors. |
PSAweb | Analysis of Protein Sequence and Multiple Alignment. |
PSEApred | Prediction of Plasmodium Secretory and Infected Erythrocyte Associated Proteins. |
PSLpred | Predict subcellular localization of prokaryotic proteins. |
QASpro | A webserver for the Quality Assesment of Protein Structure. |
RBpred | A weather based rice blast prediction server. |
RNAcon | A web-server for the prediction and classification of non-coding RNAs. |
RNAint | Identification of RNA interacting residues in a protein. |
RNApin | Prediction of Protein Interacting Nucleotides (PINs) in RNA sequences. |
RNApred | A webserver for the prediction of RNA binding proteins. |
RSLpred | A method for the subcellular localization prediction of rice proteins. |
SAMbinder | A method for predicting S-adenosyl-L-methionine binding sites in a protein |
SAPdb | A database of nanostructure formed by self assembly of short peptide. |
SARpred | A neural network based method predicts the real value of surface acessibility. |
SATPdb | A database of structurally annotated therapeutic peptides. |
siRNAPred | SVM based method for predicting efficacy value of siRNA. |
SRF | A program to find repeats through an analysis of the power spectrum of a given DNA sequence. |
SRTPred | A method for the classification of protein sequence as secretory or non-secretory protein. |
StarPDB | A webserver for annotating structure of a protein using simililarity based approach. |
TAPPred | A webserver for predicting binding affinity of peptides toward the TAP transporter. |
TBBPred | A webserver for the prediction of transmembrane Beta barrel regions in a given protein sequence. |
TBPred | A webserver that predicts four subcellular localization of mycobacterial proteins. |
THPdb | A database of FDA approved therapeutic peptides and proteins. |
TLR4HI | SVM based model for computing inhbitors against human TLR4 (Toll like receptor). |
TopicalPdb | A Database of Topically Administered Peptide. |
ToxinPred | An in silico method, which is developed to predict and design toxic/non-toxic peptides. |
ToxiPred | A server for prediction of aqueous toxicity of small chemical molecules in T. pyriformis. |
tRNAmod | The tRNAmod is a web-server for the prediction of transfer RNA (tRNA) modifications. |
TSPPRED | A webservice for predicting Tertiary Structure of proteins. |
TumorHoPe | A comprehensive database of Tumor Homing Peptides. |
TumorHPD | A webserver for predicting and designing of tumor homing peptides. |
VaccineDA | A webserver for prediction of oligodeoxynucleotide vaccine adjuvant. |
VacTarBac | Designing subunit vaccine against major pathogenic species of bacteria |
VaxinPAD | A webserver for designing peptide based vaccine adjuvant. |
VGIchain | Voltage gated ion channel prediction server. |
VICMpred | Prediction of Virulence factors, Information molecule, Cellular process and Metabolism molecule in the Bacterial proteins. |
VitaPred | A webserver for predicting the vitamin interacting residue. |
VLCvirus | A webserver for predicting the vitamin interacting residue. |
XIAPin | Designing of efficient inhibitors against apoptosis protein XIAP (inhibitor against drug resistance cancer). |
ZikaVR | An Integrated Zika Virus Resource for Genomics, Proteomics, Phylogenetic and Therapeutic Analysis. |